Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs6712082 chr2:178784087 G/A 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs67121141 chr2:178787758 GTC/G 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs6729569 chr2:47169099 A/C 3.25E-6 490 30.8 32.4 36.77 KM Plot
PRAD rs6740251 chr2:178784032 A/G 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs6743349 chr2:131715368 G/T 1.38E-6 485 31 31.4 19.3 KM Plot
PRAD rs6743846 chr2:10480415 A/G 6.38E-10 494 10.03 33.25 30.23 KM Plot
PRAD rs6747173 chr2:88986248 C/T 1.2E-5 494 31.25 28.77 70.5 KM Plot
PRAD rs6748440 chr2:239100375 C/T 9.24E-10 471 31.68 28.93 30.45 KM Plot
PRAD rs67504129 chr18:76656141 C/A 4.25E-6 482 30.33 31.4 37.57 KM Plot
PRAD rs67513606 chr20:425169 G/C 7.32E-8 494 31.27 24.13 21.2 KM Plot
PRAD rs67542101 chr17:62984301 T/C 1.34E-8 478 30.8 31.62 19.63 KM Plot
PRAD rs67550210 chr5:179034764 G/A 0.000157 480 30.73 34.37 32.9 KM Plot
PRAD rs6755386 chr2:47168892 G/C 3.25E-6 490 30.8 32.4 36.77 KM Plot
PRAD rs6755410 chr2:10480083 A/C 1.42E-11 481 30.53 33.37 10.03 KM Plot
PRAD rs6758633 chr2:10480201 T/C 1.42E-11 482 30.33 33.37 10.03 KM Plot